up

crazy_functions/rag_fns/arxiv_fns/arxiv_downloader.py

@@ -0,0 +1,111 @@
+import logging
+import requests
+import tarfile
+from pathlib import Path
+from typing import Optional, Dict
+
+class ArxivDownloader:
+    """用于下载arXiv论文源码的下载器"""
+    
+    def __init__(self, root_dir: str = "./papers", proxies: Optional[Dict[str, str]] = None):
+        """
+        初始化下载器
+        
+        Args:
+            root_dir: 保存下载文件的根目录
+            proxies: 代理服务器设置，例如 {"http": "http://proxy:port", "https": "https://proxy:port"}
+        """
+        self.root_dir = Path(root_dir)
+        self.root_dir.mkdir(exist_ok=True)
+        self.proxies = proxies
+        
+        # 配置日志
+        logging.basicConfig(
+            level=logging.INFO,
+            format='%(asctime)s - %(levelname)s - %(message)s'
+        )
+        
+    def _download_and_extract(self, arxiv_id: str) -> str:
+        """
+        下载并解压arxiv论文源码
+        
+        Args:
+            arxiv_id: arXiv论文ID，例如"2103.00020"
+            
+        Returns:
+            str: 解压后的文件目录路径
+            
+        Raises:
+            RuntimeError: 当下载失败时抛出
+        """
+        paper_dir = self.root_dir / arxiv_id
+        tar_path = paper_dir / f"{arxiv_id}.tar.gz"
+        
+        # 检查缓存
+        if paper_dir.exists() and any(paper_dir.iterdir()):
+            logging.info(f"Using cached version for {arxiv_id}")
+            return str(paper_dir)
+            
+        paper_dir.mkdir(exist_ok=True)
+        
+        urls = [
+            f"https://arxiv.org/src/{arxiv_id}",
+            f"https://arxiv.org/e-print/{arxiv_id}"
+        ]
+        
+        for url in urls:
+            try:
+                logging.info(f"Downloading from {url}")
+                response = requests.get(url, proxies=self.proxies)
+                if response.status_code == 200:
+                    tar_path.write_bytes(response.content)
+                    with tarfile.open(tar_path, 'r:gz') as tar:
+                        tar.extractall(path=paper_dir)
+                    return str(paper_dir)
+            except Exception as e:
+                logging.warning(f"Download failed for {url}: {e}")
+                continue
+                
+        raise RuntimeError(f"Failed to download paper {arxiv_id}")
+        
+    def download_paper(self, arxiv_id: str) -> str:
+        """
+        下载指定的arXiv论文
+        
+        Args:
+            arxiv_id: arXiv论文ID
+            
+        Returns:
+            str: 论文文件所在的目录路径
+        """
+        return self._download_and_extract(arxiv_id)
+
+def main():
+    """测试下载功能"""
+    # 配置代理（如果需要）
+    proxies = {
+        "http": "http://your-proxy:port",
+        "https": "https://your-proxy:port"
+    }
+    
+    # 创建下载器实例（如果不需要代理，可以不传入proxies参数）
+    downloader = ArxivDownloader(root_dir="./downloaded_papers", proxies=None)
+    
+    # 测试下载一篇论文（这里使用一个示例ID）
+    try:
+        paper_id = "2103.00020"  # 这是一个示例ID
+        paper_dir = downloader.download_paper(paper_id)
+        print(f"Successfully downloaded paper to: {paper_dir}")
+        
+        # 检查下载的文件
+        paper_path = Path(paper_dir)
+        if paper_path.exists():
+            print("Downloaded files:")
+            for file in paper_path.rglob("*"):
+                if file.is_file():
+                    print(f"- {file.relative_to(paper_path)}")
+    except Exception as e:
+        print(f"Error downloading paper: {e}")
+
+if __name__ == "__main__":
+    main()

crazy_functions/rag_fns/arxiv_fns/arxiv_fragment.py

@@ -0,0 +1,55 @@
+from dataclasses import dataclass
+
+@dataclass
+class ArxivFragment:
+    """Arxiv论文片段数据类"""
+    file_path: str  # 文件路径
+    content: str  # 内容
+    segment_index: int  # 片段索引
+    total_segments: int  # 总片段数
+    rel_path: str  # 相对路径
+    segment_type: str  # 片段类型(text/math/table/figure等)
+    title: str  # 论文标题
+    abstract: str  # 论文摘要
+    section: str  # 所属章节
+    is_appendix: bool  # 是否是附录
+    importance: float = 1.0  # 重要性得分
+
+    @staticmethod
+    def merge_segments(seg1: 'ArxivFragment', seg2: 'ArxivFragment') -> 'ArxivFragment':
+        """
+        合并两个片段的静态方法
+
+        Args:
+            seg1: 第一个片段
+            seg2: 第二个片段
+
+        Returns:
+            ArxivFragment: 合并后的片段
+        """
+        # 合并内容
+        merged_content = f"{seg1.content}\n{seg2.content}"
+
+        # 确定合并后的类型
+        def _merge_segment_type(type1: str, type2: str) -> str:
+            if type1 == type2:
+                return type1
+            if type1 == 'text':
+                return type2
+            if type2 == 'text':
+                return type1
+            return 'mixed'
+
+        return ArxivFragment(
+            file_path=seg1.file_path,
+            content=merged_content,
+            segment_index=seg1.segment_index,
+            total_segments=seg1.total_segments - 1,
+            rel_path=seg1.rel_path,
+            segment_type=_merge_segment_type(seg1.segment_type, seg2.segment_type),
+            title=seg1.title,
+            abstract=seg1.abstract,
+            section=seg1.section,
+            is_appendix=seg1.is_appendix,
+            importance=max(seg1.importance, seg2.importance)
+        )

crazy_functions/rag_fns/arxiv_fns/arxiv_splitter.py

@@ -0,0 +1,449 @@
+import os
+import re
+import time
+import aiohttp
+import asyncio
+import requests
+import tarfile
+import logging
+from pathlib import Path
+from typing import Generator, List, Tuple, Optional, Dict, Set
+from concurrent.futures import ThreadPoolExecutor, as_completed
+from crazy_functions.rag_fns.arxiv_fns.tex_processor import TexProcessor
+from crazy_functions.rag_fns.arxiv_fns.arxiv_fragment import ArxivFragment
+
+
+
+def save_fragments_to_file(fragments, output_dir: str = "fragment_outputs"):
+        """
+        将所有fragments保存为单个结构化markdown文件
+
+        Args:
+            fragments: fragment列表
+            output_dir: 输出目录
+        """
+        from datetime import datetime
+        from pathlib import Path
+        import re
+
+        # 创建输出目录
+        timestamp = datetime.now().strftime("%Y%m%d_%H%M%S")
+        output_path = Path(output_dir)
+        output_path.mkdir(parents=True, exist_ok=True)
+
+        # 生成文件名
+        filename = f"fragments_{timestamp}.md"
+        file_path = output_path / filename
+
+        current_section = ""
+        section_count = {}  # 用于跟踪每个章节的片段数量
+
+        with open(file_path, "w", encoding="utf-8") as f:
+            # 写入文档头部
+            f.write("# Document Fragments Analysis\n\n")
+            f.write("## Overview\n")
+            f.write(f"- Total Fragments: {len(fragments)}\n")
+            f.write(f"- Generated Time: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}\n")
+
+            # 如果有标题和摘要，添加到开头
+            if fragments and (fragments[0].title or fragments[0].abstract):
+                f.write("\n## Paper Information\n")
+                if fragments[0].title:
+                    f.write(f"### Title\n{fragments[0].title}\n")
+                if fragments[0].abstract:
+                    f.write(f"\n### Abstract\n{fragments[0].abstract}\n")
+
+            # 生成目录
+            f.write("\n## Table of Contents\n")
+
+            # 首先收集所有章节信息
+            sections = {}
+            for fragment in fragments:
+                section = fragment.section or "Uncategorized"
+                if section not in sections:
+                    sections[section] = []
+                sections[section].append(fragment)
+
+            # 写入目录
+            for section, section_fragments in sections.items():
+                clean_section = section.strip()
+                if not clean_section:
+                    clean_section = "Uncategorized"
+                f.write(
+                    f"- [{clean_section}](#{clean_section.lower().replace(' ', '-')}) ({len(section_fragments)} fragments)\n")
+
+            # 写入正文内容
+            f.write("\n## Content\n")
+
+            # 按章节组织内容
+            for section, section_fragments in sections.items():
+                clean_section = section.strip() or "Uncategorized"
+                f.write(f"\n### {clean_section}\n")
+
+                # 写入每个fragment
+                for i, fragment in enumerate(section_fragments, 1):
+                    f.write(f"\n#### Fragment {i} ({fragment.segment_type})\n")
+
+                    # 元数据
+                    f.write("**Metadata:**\n")
+                    f.write(f"- Type: {fragment.segment_type}\n")
+                    f.write(f"- Length: {len(fragment.content)} chars\n")
+                    f.write(f"- Importance: {fragment.importance:.2f}\n")
+                    f.write(f"- Is Appendix: {fragment.is_appendix}\n")
+                    f.write(f"- File: {fragment.rel_path}\n")
+
+                    # 内容
+                    f.write("\n**Content:**\n")
+                    f.write("```tex\n")
+                    f.write(fragment.content)
+                    f.write("\n```\n")
+
+                    # 添加分隔线
+                    if i < len(section_fragments):
+                        f.write("\n---\n")
+
+            # 添加统计信息
+            f.write("\n## Statistics\n")
+            f.write("\n### Fragment Type Distribution\n")
+            type_stats = {}
+            for fragment in fragments:
+                type_stats[fragment.segment_type] = type_stats.get(fragment.segment_type, 0) + 1
+
+            for ftype, count in type_stats.items():
+                percentage = (count / len(fragments)) * 100
+                f.write(f"- {ftype}: {count} ({percentage:.1f}%)\n")
+
+            # 长度分布
+            f.write("\n### Length Distribution\n")
+            lengths = [len(f.content) for f in fragments]
+            f.write(f"- Minimum: {min(lengths)} chars\n")
+            f.write(f"- Maximum: {max(lengths)} chars\n")
+            f.write(f"- Average: {sum(lengths) / len(lengths):.1f} chars\n")
+
+        print(f"Fragments saved to: {file_path}")
+        return file_path
+
+
+
+class ArxivSplitter:
+    """Arxiv论文智能分割器"""
+
+    def __init__(self,
+                 char_range: Tuple[int, int],
+                 root_dir: str = "gpt_log/arxiv_cache",
+                 proxies: Optional[Dict[str, str]] = None,
+                 cache_ttl: int = 7 * 24 * 60 * 60):
+        """
+        初始化分割器
+
+        Args:
+            char_range: 字符数范围(最小值, 最大值)
+            root_dir: 缓存根目录
+            proxies: 代理设置
+            cache_ttl: 缓存过期时间(秒)
+        """
+        self.min_chars, self.max_chars = char_range
+        self.root_dir = Path(root_dir)
+        self.root_dir.mkdir(parents=True, exist_ok=True)
+        self.proxies = proxies or {}
+        self.cache_ttl = cache_ttl
+
+        # 动态计算最优线程数
+        import multiprocessing
+        cpu_count = multiprocessing.cpu_count()
+        # 根据CPU核心数动态设置，但设置上限防止过度并发
+        self.max_workers = min(32, cpu_count * 2)
+
+        # 初始化TeX处理器
+        self.tex_processor = TexProcessor(char_range)
+
+        # 配置日志
+        self._setup_logging()
+
+
+
+    def _setup_logging(self):
+        """配置日志"""
+        logging.basicConfig(
+            level=logging.INFO,
+            format='%(asctime)s - %(levelname)s - %(message)s'
+        )
+        self.logger = logging.getLogger(__name__)
+
+    def _normalize_arxiv_id(self, input_str: str) -> str:
+        """规范化ArXiv ID"""
+        if 'arxiv.org/' in input_str.lower():
+            # 处理URL格式
+            if '/pdf/' in input_str:
+                arxiv_id = input_str.split('/pdf/')[-1]
+            else:
+                arxiv_id = input_str.split('/abs/')[-1]
+            # 移除版本号和其他后缀
+            return arxiv_id.split('v')[0].strip()
+        return input_str.split('v')[0].strip()
+
+
+    def _check_cache(self, paper_dir: Path) -> bool:
+        """
+        检查缓存是否有效，包括文件完整性检查
+
+        Args:
+            paper_dir: 论文目录路径
+
+        Returns:
+            bool: 如果缓存有效返回True，否则返回False
+        """
+        if not paper_dir.exists():
+            return False
+
+        # 检查目录中是否存在必要文件
+        has_tex_files = False
+        has_main_tex = False
+
+        for file_path in paper_dir.rglob("*"):
+            if file_path.suffix == '.tex':
+                has_tex_files = True
+                content = self.tex_processor.read_file(str(file_path))
+                if content and r'\documentclass' in content:
+                    has_main_tex = True
+                    break
+
+        if not (has_tex_files and has_main_tex):
+            return False
+
+        # 检查缓存时间
+        cache_time = paper_dir.stat().st_mtime
+        if (time.time() - cache_time) < self.cache_ttl:
+            self.logger.info(f"Using valid cache for {paper_dir.name}")
+            return True
+
+        return False
+
+    async def download_paper(self, arxiv_id: str, paper_dir: Path) -> bool:
+        """
+        异步下载论文，包含重试机制和临时文件处理
+
+        Args:
+            arxiv_id: ArXiv论文ID
+            paper_dir: 目标目录路径
+
+        Returns:
+            bool: 下载成功返回True，否则返回False
+        """
+        from crazy_functions.rag_fns.arxiv_fns.arxiv_downloader import ArxivDownloader
+        temp_tar_path = paper_dir / f"{arxiv_id}_temp.tar.gz"
+        final_tar_path = paper_dir / f"{arxiv_id}.tar.gz"
+
+        # 确保目录存在
+        paper_dir.mkdir(parents=True, exist_ok=True)
+
+        # 尝试使用 ArxivDownloader 下载
+        try:
+            downloader = ArxivDownloader(root_dir=str(paper_dir), proxies=self.proxies)
+            downloaded_dir = downloader.download_paper(arxiv_id)
+            if downloaded_dir:
+                self.logger.info(f"Successfully downloaded using ArxivDownloader to {downloaded_dir}")
+                return True
+        except Exception as e:
+            self.logger.warning(f"ArxivDownloader failed: {str(e)}. Falling back to direct download.")
+
+        # 如果 ArxivDownloader 失败，使用原有的下载方式作为备选
+        urls = [
+            f"https://arxiv.org/src/{arxiv_id}",
+            f"https://arxiv.org/e-print/{arxiv_id}"
+        ]
+
+        max_retries = 3
+        retry_delay = 1  # 初始重试延迟（秒）
+
+        for url in urls:
+            for attempt in range(max_retries):
+                try:
+                    self.logger.info(f"Downloading from {url} (attempt {attempt + 1}/{max_retries})")
+                    async with aiohttp.ClientSession() as session:
+                        async with session.get(url, proxy=self.proxies.get('http')) as response:
+                            if response.status == 200:
+                                content = await response.read()
+
+                                # 写入临时文件
+                                temp_tar_path.write_bytes(content)
+
+                                try:
+                                    # 验证tar文件完整性并解压
+                                    loop = asyncio.get_event_loop()
+                                    await loop.run_in_executor(None, self._process_tar_file, temp_tar_path, paper_dir)
+
+                                    # 下载成功后移动临时文件到最终位置
+                                    temp_tar_path.rename(final_tar_path)
+                                    return True
+
+                                except Exception as e:
+                                    self.logger.warning(f"Invalid tar file: {str(e)}")
+                                    if temp_tar_path.exists():
+                                        temp_tar_path.unlink()
+
+                except Exception as e:
+                    self.logger.warning(f"Download attempt {attempt + 1} failed from {url}: {str(e)}")
+                    await asyncio.sleep(retry_delay * (attempt + 1))  # 指数退避
+                    continue
+
+        return False
+
+    def _process_tar_file(self, tar_path: Path, extract_path: Path):
+        """处理tar文件的同步操作"""
+        with tarfile.open(tar_path, 'r:gz') as tar:
+            tar.testall()  # 验证文件完整性
+            tar.extractall(path=extract_path)  # 解压文件
+
+    def _process_single_tex(self, file_path: str) -> List[ArxivFragment]:
+        """处理单个TeX文件"""
+        try:
+            content = self.tex_processor.read_file(file_path)
+            if not content:
+                return []
+
+            # 提取元数据
+            is_main = r'\documentclass' in content
+            title, abstract = "", ""
+            if is_main:
+                title, abstract = self.tex_processor.extract_metadata(content)
+
+            # 分割内容
+            segments = self.tex_processor.split_content(content)
+            fragments = []
+
+            for i, (segment_content, section, is_appendix) in enumerate(segments):
+                if not segment_content.strip():
+                    continue
+
+                segment_type = self.tex_processor.detect_segment_type(segment_content)
+                importance = self.tex_processor.calculate_importance(
+                    segment_content, segment_type, is_main
+                )
+                fragments.append(ArxivFragment(
+                    file_path=file_path,
+                    content=segment_content,
+                    segment_index=i,
+                    total_segments=len(segments),
+                    rel_path=str(Path(file_path).relative_to(self.root_dir)),
+                    segment_type=segment_type,
+                    title=title,
+                    abstract=abstract,
+                    section=section,
+                    is_appendix=is_appendix,
+                    importance=importance
+                ))
+
+            return fragments
+
+        except Exception as e:
+            self.logger.error(f"Error processing {file_path}: {str(e)}")
+            return []
+
+    async def process(self, arxiv_id_or_url: str) -> List[ArxivFragment]:
+        """处理ArXiv论文"""
+        try:
+            arxiv_id = self._normalize_arxiv_id(arxiv_id_or_url)
+            paper_dir = self.root_dir / arxiv_id
+
+            # 检查缓存
+            if not self._check_cache(paper_dir):
+                paper_dir.mkdir(exist_ok=True)
+                if not await self.download_paper(arxiv_id, paper_dir):
+                    raise RuntimeError(f"Failed to download paper {arxiv_id}")
+
+            # 查找主TeX文件
+            main_tex = self.tex_processor.find_main_tex_file(str(paper_dir))
+            if not main_tex:
+                raise RuntimeError(f"No main TeX file found in {paper_dir}")
+
+            # 获取所有相关TeX文件
+            tex_files = self.tex_processor.resolve_includes(main_tex)
+            if not tex_files:
+                raise RuntimeError(f"No valid TeX files found for {arxiv_id}")
+
+            # 并行处理所有TeX文件
+            fragments = []
+            chunk_size = max(1, len(tex_files) // self.max_workers)  # 计算每个线程处理的文件数
+            loop = asyncio.get_event_loop()
+
+            async def process_chunk(chunk_files):
+                chunk_fragments = []
+                for file_path in chunk_files:
+                    try:
+                        result = await loop.run_in_executor(None, self._process_single_tex, file_path)
+                        chunk_fragments.extend(result)
+                    except Exception as e:
+                        self.logger.error(f"Error processing {file_path}: {str(e)}")
+                return chunk_fragments
+
+            # 将文件分成多个块
+            file_chunks = [tex_files[i:i + chunk_size] for i in range(0, len(tex_files), chunk_size)]
+            # 异步处理每个块
+            chunk_results = await asyncio.gather(*[process_chunk(chunk) for chunk in file_chunks])
+            for result in chunk_results:
+                fragments.extend(result)
+            # 重新计算片段索引并排序
+            fragments.sort(key=lambda x: (x.rel_path, x.segment_index))
+            total_fragments = len(fragments)
+
+            for i, fragment in enumerate(fragments):
+                fragment.segment_index = i
+                fragment.total_segments = total_fragments
+            # 在返回之前添加过滤
+            fragments = self.tex_processor.filter_fragments(fragments)
+            return fragments
+
+        except Exception as e:
+            self.logger.error(f"Failed to process {arxiv_id_or_url}: {str(e)}")
+            raise
+
+
+async def test_arxiv_splitter():
+    """测试ArXiv分割器的功能"""
+
+    # 测试配置
+    test_cases = [
+        {
+            "arxiv_id": "2411.03663",
+            "expected_title": "Large Language Models and Simple Scripts",
+            "min_fragments": 10,
+        },
+        # {
+        #     "arxiv_id": "1805.10988",
+        #     "expected_title": "RAG vs Fine-tuning",
+        #     "min_fragments": 15,
+        # }
+    ]
+
+    # 创建分割器实例
+    splitter = ArxivSplitter(
+        char_range=(800, 1800),
+        root_dir="test_cache"
+    )
+
+
+    for case in test_cases:
+        print(f"\nTesting paper: {case['arxiv_id']}")
+        try:
+            fragments = await splitter.process(case['arxiv_id'])
+
+            # 保存fragments
+            output_dir = save_fragments_to_file(fragments,output_dir="crazy_functions/rag_fns/arxiv_fns/gpt_log")
+            print(f"Output saved to: {output_dir}")
+            # 内容检查
+            for fragment in fragments:
+                # 长度检查
+
+                print((fragment.content))
+                print(len(fragment.content))
+                # 类型检查
+
+
+        except Exception as e:
+            print(f"✗ Test failed for {case['arxiv_id']}: {str(e)}")
+            raise
+
+
+if __name__ == "__main__":
+    asyncio.run(test_arxiv_splitter())

crazy_functions/rag_fns/arxiv_fns/latex_patterns.py

@@ -0,0 +1,395 @@
+from dataclasses import dataclass, field
+
+@dataclass
+class LaTeXPatterns:
+    """LaTeX模式存储类，用于集中管理所有LaTeX相关的正则表达式模式"""
+    special_envs = {
+        'math': [
+            # 基础数学环境
+            r'\\begin{(equation|align|gather|eqnarray|multline|flalign|alignat)\*?}.*?\\end{\1\*?}',
+            r'\$\$.*?\$\$',
+            r'\$[^$]+\$',
+            # 矩阵环境
+            r'\\begin{(matrix|pmatrix|bmatrix|Bmatrix|vmatrix|Vmatrix|smallmatrix)\*?}.*?\\end{\1\*?}',
+            # 数组环境
+            r'\\begin{(array|cases|aligned|gathered|split)\*?}.*?\\end{\1\*?}',
+            # 其他数学环境
+            r'\\begin{(subequations|math|displaymath)\*?}.*?\\end{\1\*?}'
+        ],
+
+        'table': [
+            # 基础表格环境
+            r'\\begin{(table|tabular|tabularx|tabulary|longtable)\*?}.*?\\end{\1\*?}',
+            # 复杂表格环境
+            r'\\begin{(tabu|supertabular|xtabular|mpsupertabular)\*?}.*?\\end{\1\*?}',
+            # 自定义表格环境
+            r'\\begin{(threeparttable|tablefootnote)\*?}.*?\\end{\1\*?}',
+            # 表格注释环境
+            r'\\begin{(tablenotes)\*?}.*?\\end{\1\*?}'
+        ],
+
+        'figure': [
+            # 图片环境
+            r'\\begin{figure\*?}.*?\\end{figure\*?}',
+            r'\\begin{(subfigure|wrapfigure)\*?}.*?\\end{\1\*?}',
+            # 图片插入命令
+            r'\\includegraphics(\[.*?\])?\{.*?\}',
+            # tikz 图形环境
+            r'\\begin{(tikzpicture|pgfpicture)\*?}.*?\\end{\1\*?}',
+            # 其他图形环境
+            r'\\begin{(picture|pspicture)\*?}.*?\\end{\1\*?}'
+        ],
+
+        'algorithm': [
+            # 算法环境
+            r'\\begin{(algorithm|algorithmic|algorithm2e|algorithmicx)\*?}.*?\\end{\1\*?}',
+            r'\\begin{(lstlisting|verbatim|minted|listing)\*?}.*?\\end{\1\*?}',
+            # 代码块环境
+            r'\\begin{(code|verbatimtab|verbatimwrite)\*?}.*?\\end{\1\*?}',
+            # 伪代码环境
+            r'\\begin{(pseudocode|procedure)\*?}.*?\\end{\1\*?}'
+        ],
+
+        'list': [
+            # 列表环境
+            r'\\begin{(itemize|enumerate|description)\*?}.*?\\end{\1\*?}',
+            r'\\begin{(list|compactlist|bulletlist)\*?}.*?\\end{\1\*?}',
+            # 自定义列表环境
+            r'\\begin{(tasks|todolist)\*?}.*?\\end{\1\*?}'
+        ],
+
+        'theorem': [
+            # 定理类环境
+            r'\\begin{(theorem|lemma|proposition|corollary)\*?}.*?\\end{\1\*?}',
+            r'\\begin{(definition|example|proof|remark)\*?}.*?\\end{\1\*?}',
+            # 其他证明环境
+            r'\\begin{(axiom|property|assumption|conjecture)\*?}.*?\\end{\1\*?}'
+        ],
+
+        'box': [
+            # 文本框环境
+            r'\\begin{(tcolorbox|mdframed|framed|shaded)\*?}.*?\\end{\1\*?}',
+            r'\\begin{(boxedminipage|shadowbox)\*?}.*?\\end{\1\*?}',
+            # 强调环境
+            r'\\begin{(important|warning|info|note)\*?}.*?\\end{\1\*?}'
+        ],
+
+        'quote': [
+            # 引用环境
+            r'\\begin{(quote|quotation|verse|abstract)\*?}.*?\\end{\1\*?}',
+            r'\\begin{(excerpt|epigraph)\*?}.*?\\end{\1\*?}'
+        ],
+
+        'bibliography': [
+            # 参考文献环境
+            r'\\begin{(thebibliography|bibliography)\*?}.*?\\end{\1\*?}',
+            r'\\begin{(biblist|citelist)\*?}.*?\\end{\1\*?}'
+        ],
+
+        'index': [
+            # 索引环境
+            r'\\begin{(theindex|printindex)\*?}.*?\\end{\1\*?}',
+            r'\\begin{(glossary|acronym)\*?}.*?\\end{\1\*?}'
+        ]
+    }
+    # 章节模式
+    section_patterns = [
+        # 基础章节命令
+        r'\\chapter\{([^}]+)\}',
+        r'\\section\{([^}]+)\}',
+        r'\\subsection\{([^}]+)\}',
+        r'\\subsubsection\{([^}]+)\}',
+        r'\\paragraph\{([^}]+)\}',
+        r'\\subparagraph\{([^}]+)\}',
+
+        # 带星号的变体(不编号)
+        r'\\chapter\*\{([^}]+)\}',
+        r'\\section\*\{([^}]+)\}',
+        r'\\subsection\*\{([^}]+)\}',
+        r'\\subsubsection\*\{([^}]+)\}',
+        r'\\paragraph\*\{([^}]+)\}',
+        r'\\subparagraph\*\{([^}]+)\}',
+
+        # 特殊章节
+        r'\\part\{([^}]+)\}',
+        r'\\part\*\{([^}]+)\}',
+        r'\\appendix\{([^}]+)\}',
+
+        # 前言部分
+        r'\\frontmatter\{([^}]+)\}',
+        r'\\mainmatter\{([^}]+)\}',
+        r'\\backmatter\{([^}]+)\}',
+
+        # 目录相关
+        r'\\tableofcontents',
+        r'\\listoffigures',
+        r'\\listoftables',
+
+        # 自定义章节命令
+        r'\\addchap\{([^}]+)\}',  # KOMA-Script类
+        r'\\addsec\{([^}]+)\}',  # KOMA-Script类
+        r'\\minisec\{([^}]+)\}',  # KOMA-Script类
+
+        # 带可选参数的章节命令
+        r'\\chapter\[([^]]+)\]\{([^}]+)\}',
+        r'\\section\[([^]]+)\]\{([^}]+)\}',
+        r'\\subsection\[([^]]+)\]\{([^}]+)\}'
+    ]
+
+    # 包含模式
+    include_patterns = [
+        r'\\(input|include|subfile)\{([^}]+)\}'
+    ]
+
+    metadata_patterns = {
+    # 标题相关
+    'title': [
+        r'\\title\{([^}]+)\}',
+        r'\\Title\{([^}]+)\}',
+        r'\\doctitle\{([^}]+)\}',
+        r'\\subtitle\{([^}]+)\}',
+        r'\\chapter\*?\{([^}]+)\}',  # 第一章可能作为标题
+        r'\\maketitle\s*\\section\*?\{([^}]+)\}'  # 第一节可能作为标题
+    ],
+
+    # 摘要相关
+    'abstract': [
+        r'\\begin{abstract}(.*?)\\end{abstract}',
+        r'\\abstract\{([^}]+)\}',
+        r'\\begin{摘要}(.*?)\\end{摘要}',
+        r'\\begin{Summary}(.*?)\\end{Summary}',
+        r'\\begin{synopsis}(.*?)\\end{synopsis}',
+        r'\\begin{abstracten}(.*?)\\end{abstracten}'  # 英文摘要
+    ],
+
+    # 作者信息
+    'author': [
+        r'\\author\{([^}]+)\}',
+        r'\\Author\{([^}]+)\}',
+        r'\\authorinfo\{([^}]+)\}',
+        r'\\authors\{([^}]+)\}',
+        r'\\author\[([^]]+)\]\{([^}]+)\}',  # 带附加信息的作者
+        r'\\begin{authors}(.*?)\\end{authors}'
+    ],
+
+    # 日期相关
+    'date': [
+        r'\\date\{([^}]+)\}',
+        r'\\Date\{([^}]+)\}',
+        r'\\submitdate\{([^}]+)\}',
+        r'\\publishdate\{([^}]+)\}',
+        r'\\revisiondate\{([^}]+)\}'
+    ],
+
+    # 关键词
+    'keywords': [
+        r'\\keywords\{([^}]+)\}',
+        r'\\Keywords\{([^}]+)\}',
+        r'\\begin{keywords}(.*?)\\end{keywords}',
+        r'\\key\{([^}]+)\}',
+        r'\\begin{关键词}(.*?)\\end{关键词}'
+    ],
+
+    # 机构/单位
+    'institution': [
+        r'\\institute\{([^}]+)\}',
+        r'\\institution\{([^}]+)\}',
+        r'\\affiliation\{([^}]+)\}',
+        r'\\organization\{([^}]+)\}',
+        r'\\department\{([^}]+)\}'
+    ],
+
+    # 学科/主题
+    'subject': [
+        r'\\subject\{([^}]+)\}',
+        r'\\Subject\{([^}]+)\}',
+        r'\\field\{([^}]+)\}',
+        r'\\discipline\{([^}]+)\}'
+    ],
+
+    # 版本信息
+    'version': [
+        r'\\version\{([^}]+)\}',
+        r'\\revision\{([^}]+)\}',
+        r'\\release\{([^}]+)\}'
+    ],
+
+    # 许可证/版权
+    'license': [
+        r'\\license\{([^}]+)\}',
+        r'\\copyright\{([^}]+)\}',
+        r'\\begin{license}(.*?)\\end{license}'
+    ],
+
+    # 联系方式
+    'contact': [
+        r'\\email\{([^}]+)\}',
+        r'\\phone\{([^}]+)\}',
+        r'\\address\{([^}]+)\}',
+        r'\\contact\{([^}]+)\}'
+    ],
+
+    # 致谢
+    'acknowledgments': [
+        r'\\begin{acknowledgments}(.*?)\\end{acknowledgments}',
+        r'\\acknowledgments\{([^}]+)\}',
+        r'\\thanks\{([^}]+)\}',
+        r'\\begin{致谢}(.*?)\\end{致谢}'
+    ],
+
+    # 项目/基金
+    'funding': [
+        r'\\funding\{([^}]+)\}',
+        r'\\grant\{([^}]+)\}',
+        r'\\project\{([^}]+)\}',
+        r'\\support\{([^}]+)\}'
+    ],
+
+    # 分类号/编号
+    'classification': [
+        r'\\classification\{([^}]+)\}',
+        r'\\serialnumber\{([^}]+)\}',
+        r'\\id\{([^}]+)\}',
+        r'\\doi\{([^}]+)\}'
+    ],
+
+    # 语言
+    'language': [
+        r'\\documentlanguage\{([^}]+)\}',
+        r'\\lang\{([^}]+)\}',
+        r'\\language\{([^}]+)\}'
+    ]
+}
+    latex_only_patterns = {
+        # 文档类和包引入
+        r'\\documentclass(\[.*?\])?\{.*?\}',
+        r'\\usepackage(\[.*?\])?\{.*?\}',
+        # 常见的文档设置命令
+        r'\\setlength\{.*?\}\{.*?\}',
+        r'\\newcommand\{.*?\}(\[.*?\])?\{.*?\}',
+        r'\\renewcommand\{.*?\}(\[.*?\])?\{.*?\}',
+        r'\\definecolor\{.*?\}\{.*?\}\{.*?\}',
+        # 页面设置相关
+        r'\\pagestyle\{.*?\}',
+        r'\\thispagestyle\{.*?\}',
+        # 其他常见的设置命令
+        r'\\bibliographystyle\{.*?\}',
+        r'\\bibliography\{.*?\}',
+        r'\\setcounter\{.*?\}\{.*?\}',
+        # 字体和文本设置命令
+        r'\\makeFNbottom',
+        r'\\@setfontsize\\[A-Z]+\{.*?\}\{.*?\}',  # 匹配字体大小设置
+        r'\\renewcommand\\[A-Z]+\{\\@setfontsize\\[A-Z]+\{.*?\}\{.*?\}\}',
+        r'\\renewcommand\{?\\thefootnote\}?\{\\fnsymbol\{footnote\}\}',
+        r'\\renewcommand\\footnoterule\{.*?\}',
+        r'\\color\{.*?\}',
+
+        # 页面和节标题设置
+        r'\\setcounter\{secnumdepth\}\{.*?\}',
+        r'\\renewcommand\\@biblabel\[.*?\]\{.*?\}',
+        r'\\renewcommand\\@makefntext\[.*?\](\{.*?\})*',
+        r'\\renewcommand\{?\\figurename\}?\{.*?\}',
+
+        # 字体样式设置
+        r'\\sectionfont\{.*?\}',
+        r'\\subsectionfont\{.*?\}',
+        r'\\subsubsectionfont\{.*?\}',
+
+        # 间距和布局设置
+        r'\\setstretch\{.*?\}',
+        r'\\setlength\{\\skip\\footins\}\{.*?\}',
+        r'\\setlength\{\\footnotesep\}\{.*?\}',
+        r'\\setlength\{\\jot\}\{.*?\}',
+        r'\\hrule\s+width\s+.*?\s+height\s+.*?',
+
+        # makeatletter 和 makeatother
+        r'\\makeatletter\s*',
+        r'\\makeatother\s*',
+        r'\\footnotetext\{[^}]*\$\^{[^}]*}\$[^}]*\}',  # 带有上标的脚注
+        # r'\\footnotetext\{[^}]*\}',  # 普通脚注
+        # r'\\footnotetext\{.*?(?:\$\^{.*?}\$)?.*?(?:email\s*:\s*[^}]*)?.*?\}',  # 带有邮箱的脚注
+        # r'\\footnotetext\{.*?(?:ESI|DOI).*?\}',  # 带有 DOI 或 ESI 引用的脚注
+        # 文档结构命令
+        r'\\begin\{document\}',
+        r'\\end\{document\}',
+        r'\\maketitle',
+        r'\\printbibliography',
+        r'\\newpage',
+
+        # 输入文件命令
+        r'\\input\{[^}]*\}',
+        r'\\input\{.*?\.tex\}',  # 特别匹配 .tex 后缀的输入
+
+        # 脚注相关
+        # r'\\footnotetext\[\d+\]\{[^}]*\}',  # 带编号的脚注
+
+        # 致谢环境
+        r'\\begin\{ack\}',
+        r'\\end\{ack\}',
+        r'\\begin\{ack\}[^\n]*(?:\n.*?)*?\\end\{ack\}',  # 匹配整个致谢环境及其内容
+
+        # 其他文档控制命令
+        r'\\renewcommand\{\\thefootnote\}\{\\fnsymbol\{footnote\}\}',
+    }
+    math_envs = [
+        # 基础数学环境
+        (r'\\begin{equation\*?}.*?\\end{equation\*?}', 'equation'),  # 单行公式
+        (r'\\begin{align\*?}.*?\\end{align\*?}', 'align'),  # 多行对齐公式
+        (r'\\begin{gather\*?}.*?\\end{gather\*?}', 'gather'),  # 多行居中公式
+        (r'\$\$.*?\$\$', 'display'),  # 行间公式
+        (r'\$.*?\$', 'inline'),  # 行内公式
+
+        # 矩阵环境
+        (r'\\begin{matrix}.*?\\end{matrix}', 'matrix'),  # 基础矩阵
+        (r'\\begin{pmatrix}.*?\\end{pmatrix}', 'pmatrix'),  # 圆括号矩阵
+        (r'\\begin{bmatrix}.*?\\end{bmatrix}', 'bmatrix'),  # 方括号矩阵
+        (r'\\begin{vmatrix}.*?\\end{vmatrix}', 'vmatrix'),  # 竖线矩阵
+        (r'\\begin{Vmatrix}.*?\\end{Vmatrix}', 'Vmatrix'),  # 双竖线矩阵
+        (r'\\begin{smallmatrix}.*?\\end{smallmatrix}', 'smallmatrix'),  # 小号矩阵
+
+        # 数组环境
+        (r'\\begin{array}.*?\\end{array}', 'array'),  # 数组
+        (r'\\begin{cases}.*?\\end{cases}', 'cases'),  # 分段函数
+
+        # 多行公式环境
+        (r'\\begin{multline\*?}.*?\\end{multline\*?}', 'multline'),  # 多行单个公式
+        (r'\\begin{split}.*?\\end{split}', 'split'),  # 拆分长公式
+        (r'\\begin{alignat\*?}.*?\\end{alignat\*?}', 'alignat'),  # 对齐环境带间距控制
+        (r'\\begin{flalign\*?}.*?\\end{flalign\*?}', 'flalign'),  # 完全左对齐
+
+        # 特殊数学环境
+        (r'\\begin{subequations}.*?\\end{subequations}', 'subequations'),  # 子公式编号
+        (r'\\begin{gathered}.*?\\end{gathered}', 'gathered'),  # 居中对齐组
+        (r'\\begin{aligned}.*?\\end{aligned}', 'aligned'),  # 内部对齐组
+
+        # 定理类环境
+        (r'\\begin{theorem}.*?\\end{theorem}', 'theorem'),  # 定理
+        (r'\\begin{lemma}.*?\\end{lemma}', 'lemma'),  # 引理
+        (r'\\begin{proof}.*?\\end{proof}', 'proof'),  # 证明
+
+        # 数学模式中的表格环境
+        (r'\\begin{tabular}.*?\\end{tabular}', 'tabular'),  # 表格
+        (r'\\begin{array}.*?\\end{array}', 'array'),  # 数组
+
+        # 其他专业数学环境
+        (r'\\begin{CD}.*?\\end{CD}', 'CD'),  # 交换图
+        (r'\\begin{boxed}.*?\\end{boxed}', 'boxed'),  # 带框公式
+        (r'\\begin{empheq}.*?\\end{empheq}', 'empheq'),  # 强调公式
+
+        # 化学方程式环境 (需要加载 mhchem 包)
+        (r'\\begin{reaction}.*?\\end{reaction}', 'reaction'),  # 化学反应式
+        (r'\\ce\{.*?\}', 'chemequation'),  # 化学方程式
+
+        # 物理单位环境 (需要加载 siunitx 包)
+        (r'\\SI\{.*?\}\{.*?\}', 'SI'),  # 物理单位
+        (r'\\si\{.*?\}', 'si'),  # 单位
+
+        # 补充环境
+        (r'\\begin{equation\+}.*?\\end{equation\+}', 'equation+'),  # breqn包的自动换行公式
+        (r'\\begin{dmath\*?}.*?\\end{dmath\*?}', 'dmath'),  # breqn包的显示数学模式
+        (r'\\begin{dgroup\*?}.*?\\end{dgroup\*?}', 'dgroup'),  # breqn包的公式组
+    ]
+
+    # 示例使用函数
+
+    # 使用示例

crazy_functions/rag_fns/light_rag/core/storage.py

@@ -13,18 +13,19 @@ from crazy_functions.rag_fns.llama_index_worker import LlamaIndexRagWorker
 
 T = TypeVar('T')
 
-@dataclass 
+
+@dataclass
 class StorageBase:
     """Base class for all storage implementations"""
     namespace: str
     working_dir: str
-    
+
     async def index_done_callback(self):
         """Hook called after indexing operations"""
         pass
-    
+
     async def query_done_callback(self):
-        """Hook called after query operations"""  
+        """Hook called after query operations"""
         pass
 
 
@@ -32,37 +33,37 @@ class StorageBase:
 class JsonKVStorage(StorageBase, Generic[T]):
     """
     Key-Value storage using JSON files
-    
+
     Attributes:
         namespace (str): Storage namespace
         working_dir (str): Working directory for storage files
         _file_name (str): JSON file path
         _data (Dict[str, T]): In-memory storage
     """
-    
+
     def __post_init__(self):
         """Initialize storage file and load data"""
-        self._file_name = os.path.join(self.working_dir, f"kv_{self.namespace}.json")
+        self._file_name = os.path.join(self.working_dir, f"kv_store_{self.namespace}.json")
         self._data: Dict[str, T] = {}
         self.load()
-        
+
     def load(self):
         """Load data from JSON file"""
         if os.path.exists(self._file_name):
             with open(self._file_name, 'r', encoding='utf-8') as f:
                 self._data = json.load(f)
                 logger.info(f"Loaded {len(self._data)} items from {self._file_name}")
-                
+
     async def save(self):
         """Save data to JSON file"""
         os.makedirs(os.path.dirname(self._file_name), exist_ok=True)
         with open(self._file_name, 'w', encoding='utf-8') as f:
             json.dump(self._data, f, ensure_ascii=False, indent=2)
-            
+
     async def get_by_id(self, id: str) -> Optional[T]:
         """Get item by ID"""
         return self._data.get(id)
-        
+
     async def get_by_ids(self, ids: List[str], fields: Optional[Set[str]] = None) -> List[Optional[T]]:
         """Get multiple items by IDs with optional field filtering"""
         if fields is None:
@@ -70,16 +71,16 @@ class JsonKVStorage(StorageBase, Generic[T]):
         return [{k: v for k, v in self._data[id].items() if k in fields}
                 if id in self._data else None
                 for id in ids]
-                
+
     async def filter_keys(self, keys: List[str]) -> Set[str]:
         """Return keys that don't exist in storage"""
         return set(k for k in keys if k not in self._data)
-        
+
     async def upsert(self, data: Dict[str, T]):
         """Insert or update items"""
         self._data.update(data)
         await self.save()
-        
+
     async def drop(self):
         """Clear all data"""
         self._data = {}
@@ -95,148 +96,225 @@ class JsonKVStorage(StorageBase, Generic[T]):
         await self.save()
 
 
+
 @dataclass
 class VectorStorage(StorageBase):
     """
-    Vector storage using LlamaIndex
-    
+    Vector storage using LlamaIndexRagWorker
+
     Attributes:
-        namespace (str): Storage namespace
+        namespace (str): Storage namespace (e.g., 'entities', 'relationships', 'chunks')
         working_dir (str): Working directory for storage files
         llm_kwargs (dict): LLM configuration
         embedding_func (OpenAiEmbeddingModel): Embedding function
-        meta_fields (Set[str]): Additional fields to store
-        cosine_better_than_threshold (float): Similarity threshold
+        meta_fields (Set[str]): Additional metadata fields to store
     """
     llm_kwargs: dict
     embedding_func: OpenAiEmbeddingModel
     meta_fields: Set[str] = field(default_factory=set)
-    cosine_better_than_threshold: float = 0.2
-    
+
     def __post_init__(self):
         """Initialize LlamaIndex worker"""
-        checkpoint_dir = os.path.join(self.working_dir, f"vector_{self.namespace}")
+        # 使用正确的文件命名格式
+        self._vector_file = os.path.join(self.working_dir, f"vdb_{self.namespace}.json")
+
+        # 设置检查点目录
+        checkpoint_dir = os.path.join(self.working_dir, f"vector_{self.namespace}_checkpoint")
+        os.makedirs(checkpoint_dir, exist_ok=True)
+
+        # 初始化向量存储
         self.vector_store = LlamaIndexRagWorker(
             user_name=self.namespace,
             llm_kwargs=self.llm_kwargs,
             checkpoint_dir=checkpoint_dir,
-            auto_load_checkpoint=True  # 自动加载检查点
+            auto_load_checkpoint=True
         )
-        
-    async def query(self, query: str, top_k: int = 5) -> List[dict]:
+        logger.info(f"Initialized vector storage for {self.namespace}")
+
+    async def query(self, query: str, top_k: int = 5, metadata_filters: Optional[Dict[str, Any]] = None) -> List[dict]:
         """
-        Query vectors by similarity
-        
+        Query vectors by similarity with optional metadata filtering
+
         Args:
             query: Query text
-            top_k: Maximum number of results
-            
+            top_k: Maximum number of results to return
+            metadata_filters: Optional metadata filters
+
         Returns:
             List of similar documents with scores
         """
-        nodes = self.vector_store.retrieve_from_store_with_query(query)
-        results = [{
-            "id": node.node_id,
-            "text": node.text,
-            "score": node.score,
-            **{k: getattr(node, k) for k in self.meta_fields if hasattr(node, k)}
-        } for node in nodes[:top_k]]
-        return [r for r in results if r.get('score', 0) > self.cosine_better_than_threshold]
-    
+        try:
+            if metadata_filters:
+                nodes = self.vector_store.retrieve_with_metadata_filter(query, metadata_filters, top_k)
+            else:
+                nodes = self.vector_store.retrieve_from_store_with_query(query)[:top_k]
+
+            results = []
+            for node in nodes:
+                result = {
+                    "id": node.node_id,
+                    "text": node.text,
+                    "score": node.score if hasattr(node, 'score') else 0.0,
+                }
+                # Add metadata fields if they exist and are in meta_fields
+                if hasattr(node, 'metadata'):
+                    result.update({
+                        k: node.metadata[k]
+                        for k in self.meta_fields
+                        if k in node.metadata
+                    })
+                results.append(result)
+
+            return results
+
+        except Exception as e:
+            logger.error(f"Error in vector query: {e}")
+            raise
+
     async def upsert(self, data: Dict[str, dict]):
         """
         Insert or update vectors
-        
+
         Args:
-            data: Dictionary of documents to insert/update
+            data: Dictionary of documents to insert/update with format:
+                  {id: {"content": text, "metadata": dict}}
         """
-        for id, item in data.items():
-            content = item["content"]
-            metadata = {k: item[k] for k in self.meta_fields if k in item}
-            self.vector_store.add_text_with_metadata(content, metadata=metadata)
-            
+        try:
+            for doc_id, item in data.items():
+                content = item["content"]
+                # 提取元数据
+                metadata = {
+                    k: item[k]
+                    for k in self.meta_fields
+                    if k in item
+                }
+                # 添加文档ID到元数据
+                metadata["doc_id"] = doc_id
+
+                # 添加到向量存储
+                self.vector_store.add_text_with_metadata(content, metadata)
+
+            # 导出向量数据到json文件
+            self.vector_store.export_nodes(
+                self._vector_file,
+                format="json",
+                include_embeddings=True
+            )
+
+        except Exception as e:
+            logger.error(f"Error in vector upsert: {e}")
+            raise
+
+    async def save(self):
+        """Save vector store to checkpoint and export data"""
+        try:
+            # 保存检查点
+            self.vector_store.save_to_checkpoint()
+
+            # 导出向量数据
+            self.vector_store.export_nodes(
+                self._vector_file,
+                format="json",
+                include_embeddings=True
+            )
+        except Exception as e:
+            logger.error(f"Error saving vector storage: {e}")
+            raise
+
     async def index_done_callback(self):
         """Save after indexing"""
-        self.vector_store.save_to_checkpoint()
+        await self.save()
+
+    def get_statistics(self) -> Dict[str, Any]:
+        """Get vector store statistics"""
+        return self.vector_store.get_statistics()
 
 
 @dataclass
 class NetworkStorage(StorageBase):
     """
     Graph storage using NetworkX
-    
+
     Attributes:
         namespace (str): Storage namespace
         working_dir (str): Working directory for storage files
     """
-    
+
     def __post_init__(self):
         """Initialize graph and storage file"""
         self._file_name = os.path.join(self.working_dir, f"graph_{self.namespace}.graphml")
         self._graph = self._load_graph() or nx.Graph()
-        
+        logger.info(f"Initialized graph storage for {self.namespace}")
+
     def _load_graph(self) -> Optional[nx.Graph]:
         """Load graph from GraphML file"""
         if os.path.exists(self._file_name):
             try:
-                return nx.read_graphml(self._file_name)
+                graph = nx.read_graphml(self._file_name)
+                logger.info(f"Loaded graph with {graph.number_of_nodes()} nodes and {graph.number_of_edges()} edges")
+                return graph
             except Exception as e:
                 logger.error(f"Error loading graph from {self._file_name}: {e}")
                 return None
         return None
-        
+
     async def save_graph(self):
         """Save graph to GraphML file"""
-        os.makedirs(os.path.dirname(self._file_name), exist_ok=True)
-        logger.info(f"Saving graph with {self._graph.number_of_nodes()} nodes, {self._graph.number_of_edges()} edges")
-        nx.write_graphml(self._graph, self._file_name)
-        
+        try:
+            os.makedirs(os.path.dirname(self._file_name), exist_ok=True)
+            logger.info(
+                f"Saving graph with {self._graph.number_of_nodes()} nodes, {self._graph.number_of_edges()} edges")
+            nx.write_graphml(self._graph, self._file_name)
+        except Exception as e:
+            logger.error(f"Error saving graph: {e}")
+            raise
+
     async def has_node(self, node_id: str) -> bool:
         """Check if node exists"""
         return self._graph.has_node(node_id)
-        
+
     async def has_edge(self, source_id: str, target_id: str) -> bool:
         """Check if edge exists"""
         return self._graph.has_edge(source_id, target_id)
-        
+
     async def get_node(self, node_id: str) -> Optional[dict]:
         """Get node attributes"""
         if not self._graph.has_node(node_id):
             return None
         return dict(self._graph.nodes[node_id])
-        
+
     async def get_edge(self, source_id: str, target_id: str) -> Optional[dict]:
         """Get edge attributes"""
         if not self._graph.has_edge(source_id, target_id):
             return None
         return dict(self._graph.edges[source_id, target_id])
-        
+
     async def node_degree(self, node_id: str) -> int:
         """Get node degree"""
         return self._graph.degree(node_id)
-        
+
     async def edge_degree(self, source_id: str, target_id: str) -> int:
         """Get sum of degrees of edge endpoints"""
         return self._graph.degree(source_id) + self._graph.degree(target_id)
-        
+
     async def get_node_edges(self, source_id: str) -> Optional[List[Tuple[str, str]]]:
         """Get all edges connected to node"""
         if not self._graph.has_node(source_id):
             return None
         return list(self._graph.edges(source_id))
-        
+
     async def upsert_node(self, node_id: str, node_data: Dict[str, str]):
         """Insert or update node"""
-        # Clean and normalize node data
         cleaned_data = {k: html.escape(str(v).upper().strip()) for k, v in node_data.items()}
         self._graph.add_node(node_id, **cleaned_data)
-        
+        await self.save_graph()
+
     async def upsert_edge(self, source_id: str, target_id: str, edge_data: Dict[str, str]):
         """Insert or update edge"""
-        # Clean and normalize edge data
         cleaned_data = {k: html.escape(str(v).strip()) for k, v in edge_data.items()}
         self._graph.add_edge(source_id, target_id, **cleaned_data)
-        
+        await self.save_graph()
+
     async def index_done_callback(self):
         """Save after indexing"""
         await self.save_graph()
@@ -245,47 +323,47 @@ class NetworkStorage(StorageBase):
         """Get the largest connected component of the graph"""
         if not self._graph:
             return nx.Graph()
-        
+
         components = list(nx.connected_components(self._graph))
         if not components:
             return nx.Graph()
-            
+
         largest_component = max(components, key=len)
         return self._graph.subgraph(largest_component).copy()
-        
-    async def embed_nodes(self, algorithm: str, **kwargs) -> Tuple[np.ndarray, List[str]]:
-        """
-        Embed nodes using specified algorithm
-        
-        Args:
-            algorithm: Node embedding algorithm name
-            **kwargs: Additional algorithm parameters
-            
-        Returns:
-            Tuple of (node embeddings, node IDs)
-        """
+
+    async def embed_nodes(
+            self,
+            algorithm: str = "node2vec",
+            dimensions: int = 128,
+            walk_length: int = 30,
+            num_walks: int = 200,
+            workers: int = 4,
+            window: int = 10,
+            min_count: int = 1,
+            **kwargs
+    ) -> Tuple[np.ndarray, List[str]]:
+        """Generate node embeddings using specified algorithm"""
         if algorithm == "node2vec":
             from node2vec import Node2Vec
-            
-            # Create node2vec model
-            node2vec = Node2Vec(
+
+            # Create and train node2vec model
+            n2v = Node2Vec(
                 self._graph,
-                dimensions=kwargs.get('dimensions', 128),
-                walk_length=kwargs.get('walk_length', 30),
-                num_walks=kwargs.get('num_walks', 200),
-                workers=kwargs.get('workers', 4)
+                dimensions=dimensions,
+                walk_length=walk_length,
+                num_walks=num_walks,
+                workers=workers
             )
-            
-            # Train model
-            model = node2vec.fit(
-                window=kwargs.get('window', 10),
-                min_count=kwargs.get('min_count', 1)
+
+            model = n2v.fit(
+                window=window,
+                min_count=min_count
             )
-            
-            # Get embeddings
+
+            # Get embeddings for all nodes
             node_ids = list(self._graph.nodes())
             embeddings = np.array([model.wv[node] for node in node_ids])
-            
+
             return embeddings, node_ids
-        else:
-            raise ValueError(f"Unsupported embedding algorithm: {algorithm}")
+
+        raise ValueError(f"Unsupported embedding algorithm: {algorithm}")

crazy_functions/rag_fns/light_rag/example.py

@@ -23,25 +23,29 @@ class ExtractionExample:
     def __init__(self):
         """Initialize RAG system components"""
         # 设置工作目录
-        self.working_dir = f"private_upload/default_user/rag_cache_{datetime.now().strftime('%Y-%m-%d-%H-%M-%S')}"
+        self.working_dir = f"crazy_functions/rag_fns/LightRAG/rag_cache_{datetime.now().strftime('%Y-%m-%d-%H-%M-%S')}"
         os.makedirs(self.working_dir, exist_ok=True)
         logger.info(f"Working directory: {self.working_dir}")
 
         # 初始化embedding
-        self.llm_kwargs = {'api_key': os.getenv("one_api_key"), 'client_ip': '127.0.0.1',
-                  'embed_model': 'text-embedding-3-small', 'llm_model': 'one-api-Qwen2.5-72B-Instruct',
-                  'max_length': 4096, 'most_recent_uploaded': None, 'temperature': 1, 'top_p': 1}
+        self.llm_kwargs = {
+            'api_key': os.getenv("one_api_key"),
+            'client_ip': '127.0.0.1',
+            'embed_model': 'text-embedding-3-small',
+            'llm_model': 'one-api-Qwen2.5-72B-Instruct',
+            'max_length': 4096,
+            'most_recent_uploaded': None,
+            'temperature': 1,
+            'top_p': 1
+        }
         self.embedding_func = OpenAiEmbeddingModel(self.llm_kwargs)
 
         # 初始化提示模板和抽取器
         self.prompt_templates = PromptTemplates()
         self.extractor = EntityRelationExtractor(
             prompt_templates=self.prompt_templates,
-            required_prompts = {
-            'entity_extraction'
-        },
+            required_prompts={'entity_extraction'},
             entity_extract_max_gleaning=1
-
         )
 
         # 初始化存储系统
@@ -63,18 +67,33 @@ class ExtractionExample:
             working_dir=self.working_dir
         )
 
-        # 向量存储 - 用于相似度检索
-        self.vector_store = VectorStorage(
-            namespace="vectors",
+        # 向量存储 - 用于实体、关系和文本块的向量表示
+        self.entities_vdb = VectorStorage(
+            namespace="entities",
             working_dir=self.working_dir,
             llm_kwargs=self.llm_kwargs,
             embedding_func=self.embedding_func,
             meta_fields={"entity_name", "entity_type"}
         )
 
+        self.relationships_vdb = VectorStorage(
+            namespace="relationships",
+            working_dir=self.working_dir,
+            llm_kwargs=self.llm_kwargs,
+            embedding_func=self.embedding_func,
+            meta_fields={"src_id", "tgt_id"}
+        )
+
+        self.chunks_vdb = VectorStorage(
+            namespace="chunks",
+            working_dir=self.working_dir,
+            llm_kwargs=self.llm_kwargs,
+            embedding_func=self.embedding_func
+        )
+
         # 图存储 - 用于实体关系
         self.graph_store = NetworkStorage(
-            namespace="graph",
+            namespace="chunk_entity_relation",
             working_dir=self.working_dir
         )
 
@@ -152,7 +171,7 @@ class ExtractionExample:
         try:
             # 向量存储
             logger.info("Adding chunks to vector store...")
-            await self.vector_store.upsert(chunks)
+            await self.chunks_vdb.upsert(chunks)
 
             # 初始化对话历史
             self.conversation_history = {chunk_key: [] for chunk_key in chunks.keys()}
@@ -178,14 +197,32 @@ class ExtractionExample:
             # 获取结果
             nodes, edges = self.extractor.get_results()
 
-            # 存储到图数据库
-            logger.info("Storing extracted information in graph database...")
+            # 存储实体到向量数据库和图数据库
             for node_name, node_instances in nodes.items():
                 for node in node_instances:
+                    # 存储到向量数据库
+                    await self.entities_vdb.upsert({
+                        f"entity_{node_name}": {
+                            "content": f"{node_name}: {node['description']}",
+                            "entity_name": node_name,
+                            "entity_type": node['entity_type']
+                        }
+                    })
+                    # 存储到图数据库
                     await self.graph_store.upsert_node(node_name, node)
 
+            # 存储关系到向量数据库和图数据库
             for (src, tgt), edge_instances in edges.items():
                 for edge in edge_instances:
+                    # 存储到向量数据库
+                    await self.relationships_vdb.upsert({
+                        f"rel_{src}_{tgt}": {
+                            "content": f"{edge['description']} | {edge['keywords']}",
+                            "src_id": src,
+                            "tgt_id": tgt
+                        }
+                    })
+                    # 存储到图数据库
                     await self.graph_store.upsert_edge(src, tgt, edge)
 
             return nodes, edges
@@ -197,26 +234,39 @@ class ExtractionExample:
     async def query_knowledge_base(self, query: str, top_k: int = 5):
         """Query the knowledge base using various methods"""
         try:
-            # 向量相似度搜索
-            vector_results = await self.vector_store.query(query, top_k=top_k)
+            # 向量相似度搜索 - 文本块
+            chunk_results = await self.chunks_vdb.query(query, top_k=top_k)
+
+            # 向量相似度搜索 - 实体
+            entity_results = await self.entities_vdb.query(query, top_k=top_k)
 
             # 获取相关文本块
-            chunk_ids = [r["id"] for r in vector_results]
+            chunk_ids = [r["id"] for r in chunk_results]
             chunks = await self.text_chunks.get_by_ids(chunk_ids)
 
-            # 获取相关实体
-            # 假设query中包含实体名称
-            relevant_nodes = []
-            for word in query.split():
-                if await self.graph_store.has_node(word.upper()):
-                    node_data = await self.graph_store.get_node(word.upper())
-                    if node_data:
-                        relevant_nodes.append(node_data)
+            # 获取实体相关的图结构信息
+            relevant_edges = []
+            for entity in entity_results:
+                if "entity_name" in entity:
+                    entity_name = entity["entity_name"]
+                    if await self.graph_store.has_node(entity_name):
+                        edges = await self.graph_store.get_node_edges(entity_name)
+                        if edges:
+                            edge_data = []
+                            for edge in edges:
+                                edge_info = await self.graph_store.get_edge(edge[0], edge[1])
+                                if edge_info:
+                                    edge_data.append({
+                                        "source": edge[0],
+                                        "target": edge[1],
+                                        "data": edge_info
+                                    })
+                            relevant_edges.extend(edge_data)
 
             return {
-                "vector_results": vector_results,
-                "text_chunks": chunks,
-                "relevant_entities": relevant_nodes
+                "chunks": chunks,
+                "entities": entity_results,
+                "relationships": relevant_edges
             }
 
         except Exception as e:
@@ -228,30 +278,27 @@ class ExtractionExample:
         os.makedirs(export_dir, exist_ok=True)
 
         try:
-            # 导出向量存储
-            self.vector_store.vector_store.export_nodes(
-                os.path.join(export_dir, "vector_nodes.json"),
-                include_embeddings=True
-            )
-
-            # 导出图数据统计
-            graph_stats = {
-                "total_nodes": len(list(self.graph_store._graph.nodes())),
-                "total_edges": len(list(self.graph_store._graph.edges())),
-                "node_degrees": dict(self.graph_store._graph.degree()),
-                "largest_component_size": len(self.graph_store.get_largest_connected_component())
-            }
-
-            with open(os.path.join(export_dir, "graph_stats.json"), "w") as f:
-                json.dump(graph_stats, f, indent=2)
-
-            # 导出存储统计
+            # 导出统计信息
             storage_stats = {
-                "chunks": len(self.text_chunks._data),
-                "docs": len(self.full_docs._data),
-                "vector_store": self.vector_store.vector_store.get_statistics()
+                "chunks": {
+                    "total": len(self.text_chunks._data),
+                    "vector_stats": self.chunks_vdb.get_statistics()
+                },
+                "entities": {
+                    "vector_stats": self.entities_vdb.get_statistics()
+                },
+                "relationships": {
+                    "vector_stats": self.relationships_vdb.get_statistics()
+                },
+                "graph": {
+                    "total_nodes": len(list(self.graph_store._graph.nodes())),
+                    "total_edges": len(list(self.graph_store._graph.edges())),
+                    "node_degrees": dict(self.graph_store._graph.degree()),
+                    "largest_component_size": len(self.graph_store.get_largest_connected_component())
+                }
             }
 
+            # 导出统计
             with open(os.path.join(export_dir, "storage_stats.json"), "w") as f:
                 json.dump(storage_stats, f, indent=2)
 
@@ -299,19 +346,6 @@ async def main():
         the company's commitment to innovation and sustainability. The new iPhone 
         features groundbreaking AI capabilities.
         """,
-
-        # "business_news": """
-        # Microsoft and OpenAI expanded their partnership today.
-        # Satya Nadella emphasized the importance of AI development while
-        # Sam Altman discussed the future of large language models. The collaboration
-        # aims to accelerate AI research and deployment.
-        # """,
-        #
-        # "science_paper": """
-        # Researchers at DeepMind published a breakthrough paper on quantum computing.
-        # The team demonstrated novel approaches to quantum error correction.
-        # Dr. Sarah Johnson led the research, collaborating with Google's quantum lab.
-        # """
     }
 
     try: